Applied Discrete Mathematics Group

Applied Discrete Mathematics Group

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Software

  • PlantSimLab

  • ADAM - Analysis of Dynamic Algebraic Models
  • Discrete Visualizer of Dynamics (DVD)
    • for deterministic systems
    • for probabilistic system
  • Polynome (R. Laubenbacher, E. Dimitrova, L.D. Garcia, F. Hinkelmann, A. Jarrah, B. Stigler, M. Stillman, P. Vera-Licona, Parameter estimation for Boolean models, J. Theor. Comp. Sci. 2009, in press.)
    • Beta version: allows to start computations and retrieve them later
  • Interpolation tool for truth tables
  • Inferring Biologically Relevant Models: Nested Canalyzing Functions (F. Hinkelmann and A. Jarrah)
    • Library for Singular
  • An Algebra-Based Method for Inferring GRNs (P. Vera-Licona et al.)

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